Laboratory 2                                                                                                                                    Zoology 1121
                                                    Microscopy / Cell Theory

I. Microscopy
- 2 important factors in microscopy
              1. Magnification: is how much larger the object appears compares to its real size
              2. Resolving power: is a measure of the clarity of the image, or the minimum distance two points can be separated
                and still be distinguished as two separate points. (ex, a star in sky w/ unaided eye might be twin stars with a
                telescope)
- most detail with light microscopes is 0.2 micrometers , size of small bacteria or mitochondria
- about 1500x
-Discuss 4 types of microscopes; different uses in hypothetical situations
        1. Simple – 1 lens
        2. Compound – 2 lenses: ocular  x  objective
        3. Dissecting (stereomicroscope) – less magnification than compound but for objects that are too large to be viewed
            with compound.  Both transmitting and reflected light
        4. Scanning Electron Microscope [SEM] – beams of electrons views mainly by computer and photograph. Key is 2nd
            set of electrons . 2-D image. 200,000x
        5. Transmission Electron Microscope [TEM] -  1 beam of electrons passed at a organism. Not an 2D image , its 3D
- Units of measure is the micrometer
- handling of microscope :  NEVER SLIDE
- how to clean lenses – dry paper only
- never focus upwards
 

Terms
1. Ocular lens – a.k.a. eye-piece, usually a 10x magnification
2. Objective lens – provides the resolving power , mounted to the revolving nosepiece
3. Stage – slide-mounts go on here
4. Condenser - funnel of light
5. Iris diaphragm -controls amount of light passing through the condensor
6. Coarse focus
7. Fine focus
9. Field of view – size: with ruler, number of marks straight across the widest part of the field    x 1000: 4x, 10x, 40x
10. Resolving power- the formation of an image in which the details are distinctly distinguished
11. Nosepiece – objective piece rotates on this
12. Parfocal – focused under low power are also in focus under the higher magnification
13. Depth of Focus - is the vertical distance that remains in focus @ any particular point
14. Focal plane - the plane of focus passing through a specimen.  Hitting the c/f adjustments raises or lowers this

- together the ocular times the objective = magnification
- 10x = ten times the original size
- pointer eye- the eye-piece rotates to get the pointer
- the students should write in their lab manuals which of the strands of thread is on top, which is in the middle, which is
        on the bottom.
- The TA will go around the room to check each students notation and to confirm their identification or to get them to look
        more closely
- The size of fields at the different magnifications should be noted in their books
- The student will use these field sizes in later lab
 

- Lab Microscope exercise
- Stress why we are doing these exercises
1. letter “e-“ slide to learn to focus, locate things in microscope field, and illustrate how things move when being viewed
        under magnification (p209)
2. Crossed thread slide: to evaluate the depth of field
3. Ruler Slide: to enable students to measure the size of the field at each magnification which will allow for estimations
        of cell/object size in later labs
4. Have students fill out table on p. 210 (top-right) We use this data in later labs
 

II. Cell Biology
- The main objective of this lab is to understand the components of the Cell Theory and to understand what occurs during the
        Cell Cycle
- Cytology – study of cells, importance of cellular study
- cells are basic units of structure and function
- similarities among cells [conserved evolution]
- organelles, enzymes, DNA, etc
- replication also is same across different kingdoms: in amoebae, plant, animalia
- conserved over evolution- similar cellular level but see the differences at the organismal level
- increase in specialization : (cell – tissue – organ)
- selective use of genetic material

Cell Theory
1. a cell is the fundamental biological unit
2. all living things are composed of cells
3. all cells come from preexisting cells
 

Terms
1. plasma membrane – outer limiting membrane that encloses a cell
2. nuclear membrane – outer membrane that holds in the DNA and other nuclear structures
3. nucleolus – site of ribosomal RNA [rRNA] production
4. chromatin – association of DNA and proteins (ex, histine binding complex); site of mRNA  production
5. cytoplasm – the cellular matrix that contains all the other functioning units of the cell (ex, ER, Golgi  App, etc)
 

Lab Cell Exercises
    - students should note we will progress with complexity
1. Sea Star Egg  (fig. 2.2a)
        - students should find an egg and label all of its structures
        - have students estimate its size and its components
2. Human Epithelial cell
        - Give procedures for making a wet-mount
        - No Vaseline, just place cover-slips directly on slide
        - Actually better since it will flatten cells for better observation
        - Stress importance of using very little methylene blue stain
        - Have students draw and label a cheek cell in space B fig 2.2
        - Estimate the cell’s size
3. Specialized Cells – nerve cell
        - observe cell
        - estimate size and label its components in space 3 fi 2-3
        - discuss how form of cell will always reflect its function
        - this exercise is to get the students thinking about how form of cells reflect the function of the cell.
 

III. Cellular Reproduction
Whitefish blastula
Mitosis cell count experiment is designed to illustrate that cells stay in the various stages of the cell cycle for differing
        amounts of time and that the amount of time spent is a reflection of what is going on during the cell during that stage

1. Introduction
1. Cell Cycle-
2. Interphase: between mitosis creates a full complement subcellular cytoplasmic organelles as well as a second
        set of chromosomes
        - Nuclear membrane is actually intact
        - G0, G1, S, G2
3. Mitosis – begins with the separation of the duplicated chromosomes
        - Meiosis – sex separation
4. Physical events of mitosis [fig 2-10]
        - interphase, prophase, metaphase, anaphase, telophase
5. Purpose of mitosis
        - Why it occurs- for separating of nuclear material
        - Where it occurs –
6.  Blastula - early embryonic stage of a living organism
        - the students will have to count the various stages. This exercise constitutes  another type of observation that
            requires careful attention to what is on the  microscope stage.
        - The students also need to estimate the size of the blastula cells and record the size in their books
        - many cells replicating

7. Cancer cell: wildly replicating cell

Terms
1. mitosis
2. chromosomes
3. cell cycle vs. mitotic cycle
4. interphase
5. prophase
6. metaphase
7. anaphase
8. telophase
9. cytokinesis

Exercise 6
        - find all stages of mitosis on their slides
        - reinforce findings with the video scope

4. Propose: “how long does stage of mitosis take?”
        - Find answer using blastula
        - We assume 24 hrs for cell cycle, 1 hr for mitosis
        - Enforce the logic behind this exercise
        -  Make sure they understand how the number of cells counted in each stage relates to the amount of time spent
            in that stage.
        - High power objective with fixed field of view, have students count the number of cells in each stage
        - Accumulate class data on board and have students enter data ala the computer
        - Calculate means and standard deviations on board
 

5. Collection of Numerical Data
        - Collect at least 5 data points. Record data for future lab.
        -  Combine on the board
        -  students know this as average, but big science name is called “mean”
        -  Mean Examples – don’t tell you much, so  use standard error of the mean, which measure cluster around the mean
                            Ex 1.]   4 + 5+ 6 =15    Ex 2. 12 + 1 +2 =15
                                     Mean: 15 / 3 = 5   Mean: 15/3 = 5
        - Standard Error of the Mean [SEM]
        - use MSExcel
        - Summation  [=SUM(letter#:letter#)
        - Mean [=AVERAGE(R2:R26)]
        - Standard deviation [=STDEV(R2:R26)]
        - make graphs from data
        - calculate amount of time a cell spends in each stage of cell cycle
        - Again: make sure they understand how the number of cells counted in each stage relates to the amount of time
                spent in that stage.
 

Important terms:
ocular lens
objective lens
stage
condenser
coarse focus
fine focus
depth of field
field of view
plasma membrane
nuclear membrane
nucleus, nucleolus
chromatin
cytoplasm
mitosis
chromosome
cell cycle vs. mitotic cycle
interphase
prophase
metaphase
anaphase
telophase